Rocker stand bolt holes being open to the water jacket is not common but it is something that must be watched out for. In your case, it sounds like it happened when the repair to the head was performed. I’ve found it on Y heads that more than likely happened when someone had tried to tighten the rocker bolts on threaded holes that were not thoughly cleaned of oil or sludge and subsequently broke the casting at the bottom of the hole by hydraulic action. When I come across this, I simply use a stud with some sealer on the threads to keep any potential water leakage at bay.